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AI-Powered Drug Discovery Services

Protein Modeling. Molecular Docking.
Structure to Drug Lead

AlphaFold3 & Rosetta structure prediction, virtual screening, MD simulations, ADMET profiling, and full CADD pipelines — for pharma R&D, biotech startups, AYUSH validation, and academic research. From $500/target.

$500
Per target start
3–14d
Turnaround time
AF3
AlphaFold3 integrated
NDA
Full IP protection
End-to-End Workflow

From Sequence to Drug Candidate

Each step in the CADD pipeline, handled by our team. Pick individual services or commission the full pipeline.

01

Target Identification

Protein target selection from literature, genomics, or client specification

02

Structure Prediction

AlphaFold3 / Rosetta / homology modeling + validation (Ramachandran, MolProbity)

03

Molecular Docking

Virtual screening of ligand libraries, binding affinity scoring, pose analysis

04

MD Simulation

Stability validation, RMSD/RMSF, binding free energy (MM-GBSA/PBSA), trajectory analysis

05

ADMET & Reporting

Drug-likeness, toxicity prediction, Lipinski's rules, lead compound ranking + full report

Service Catalogue

Six Core Services

Commission individually or as a full CADD campaign. Every deliverable PhD-reviewed.

Protein Structure Prediction

$500–1,500/target

3D structure from sequence using AI and physics-based methods. AlphaFold3 for monomers and complexes, RoseTTAFold for multi-chain, traditional homology modeling when templates exist. Every model validated with Ramachandran, MolProbity, and ProSA-web.

PDB structure file
Confidence scores (pLDDT)
Ramachandran validation
MolProbity quality report
PyMOL visualization images
Comparison with known structures
AlphaFold3RoseTTAFold SWISS-MODEL Modeller
TAT: 3-5d

Molecular Docking & Virtual Screening

$1,000–3,000

Dock your compounds against target proteins. From single-target docking to high-throughput virtual screening of thousands of ligands. Active site identification, grid preparation, flexible/rigid docking, binding mode analysis, and interaction visualization.

Binding affinity scores
Top-ranked ligand poses
2D interaction diagrams
3D binding site visualization
Hydrogen bond / hydrophobic maps
Ranked compound report
AutoDock VinaGOLD Glide HADDOCK
TAT: 5-10d

Molecular Dynamics Simulation

$2,000–5,000/run

Validate docking results and study protein-ligand stability over time. 50–500 ns simulations using GROMACS or NAMD. RMSD, RMSF, radius of gyration, hydrogen bond analysis, binding free energy calculations (MM-GBSA / MM-PBSA).

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RMSD / RMSF plots
Radius of gyration
H-bond occupancy analysis
Binding free energy (MM-GBSA)
Trajectory snapshots
Principal component analysis
GROMACSNAMD AMBER VMD
TAT: 7-14d

ADMET & Drug-Likeness

$500–1,500/set

Absorption, Distribution, Metabolism, Excretion, and Toxicity profiling for your compound library. Lipinski's Rule of Five, Veber's rules, BBB permeability, CYP inhibition, hERG toxicity, AMES mutagenicity — all computationally predicted and report-ready.

Lipinski / Veber / Ghose filters
ADMET property table
Bioavailability radar charts
Toxicity risk assessment
CYP inhibition prediction
Lead compound ranking
SwissADMEpkCSM ADMETlab RDKit
TAT: 3-5d

Network Pharmacology

$2,000–8,000

Multi-target mechanism analysis for herbal formulations and complex drugs. Compound-target-pathway networks, PPI networks, hub gene identification, GO/KEGG enrichment. Perfect for AYUSH regulatory submissions and traditional medicine validation publications.

Compound-target network
PPI network (STRING)
Hub gene identification
GO & KEGG enrichment
Cytoscape visualizations
Publication-ready figures
CytoscapeSTRING DAVID SwissTargetPrediction
TAT: 5-10d

End-to-End CADD Campaign

$10K–50K

The complete computational drug discovery pipeline in one engagement: target identification → structure prediction → library preparation → docking → MD validation → ADMET → lead compound report. For pharma R&D and funded biotech companies.

All services above, integrated
Compound library curation
Multi-target screening
Ranked lead compound shortlist
SAR analysis
Executive summary report
Milestone-based delivery
Dedicated project manager
All tools includedTAT: 4-8 weeks

Who Uses This Service

Four distinct buyer segments — tailored deliverables.

💊

Pharma R&D

Outsourced CADD campaigns for drug pipeline targets. Virtual screening of proprietary compound libraries. NDA-protected, milestone-based delivery.

$10K–$50K/campaign
🧪

Biotech Startups

Structure prediction and docking for pitch deck data packages. Validate target-compound interactions before wet lab investment. Fast, affordable, investor-ready.

$2K–$15K/project
🌿

AYUSH / Herbal Pharma

Molecular docking of phytochemicals, network pharmacology, ADMET profiling for regulatory submissions. Publication-ready figures for evidence-based validation.

₹1.5L–₹6L/study
🎓

Academic Researchers

Structure prediction, docking, MD simulation for PhD thesis or journal publication. Methods section included. Academic pricing available.

$500–$5K/project
Pricing

Clear, Competitive Pricing

USD. AYUSH pricing in INR. Custom quotes for multi-target.

Service Starting At Range Turnaround Input
Protein Structure Prediction $500 $500–$1,500 3-5d FASTA sequence
Homology Modeling + Validation $500 $500–$1,200 3–5 days Sequence + template PDB (optional)
Molecular Docking (single) $1,000 $1K–$2K 5-7d PDB + ligands
Virtual Screening (library) $2,000 $2K–$5K 7-14d PDB + library SMILES
MD Simulation (100ns) $2,000 $2K–$5K 7-14d PDB complex
ADMET Profiling $500 $500–$1,500 3-5d SMILES list
Network Pharmacology $2,000 $2,000–$8,000 5–10 days Compound names or SMILES + disease
Full CADD Campaign $10,000 $10K–$50K 4-8 weeks Target + library

Common Questions

I only have a protein sequence — can you still do docking?

Yes — we predict the 3D structure from your sequence first (using AlphaFold3 or homology modeling), validate it, and then proceed with docking. This is actually our most common workflow. You don't need an experimental crystal structure.

Can you dock herbal/phytochemical compounds for AYUSH submissions?

Absolutely — this is one of our specialties. We source phytochemical structures from PubChem/IMPPAT, dock them against your disease targets, run network pharmacology analysis, and deliver publication-ready figures. We understand AYUSH regulatory requirements and format deliverables accordingly. Pricing in INR available.

How long does an MD simulation take?

For a standard 100 ns simulation: 7–14 days including system setup, equilibration, production run, and analysis. Longer simulations (200–500 ns) take proportionally more time. We run on GPU-accelerated servers for maximum speed. Rush delivery available for time-sensitive projects.

What if I have thousands of compounds to screen?

We handle high-throughput virtual screening — from hundreds to hundreds of thousands of compounds. We use a funnel approach: initial fast docking to filter top 1–5% hits, followed by refined docking and optionally MD simulation on the top candidates. This keeps costs manageable while ensuring thoroughness. Contact us for volume pricing.

Do you use commercial software (Schrödinger, MOE)?

Our standard toolchain uses industry-standard open-source tools (AutoDock Vina, GROMACS, AlphaFold3, RDKit) which are widely accepted in peer-reviewed journals and by regulatory bodies. If your project specifically requires commercial tools (Schrödinger Glide, MOE, etc.), we can accommodate this — contact us for availability and pricing adjustments.

Will my compounds be kept confidential?

Yes — we sign an NDA before any data exchange. Your proprietary compound structures, targets, and results are never shared, published, or used for any other purpose. All data is stored on encrypted servers and deleted after project completion unless you request retention. Full IP ownership stays with you.
GET STARTED

Describe Your Target.
We'll Design the Campaign.

Free consultation — we assess feasibility, recommend the right approach, and deliver a clear proposal within 24 hours.

Response Time

Within 24 hours

🌿 AYUSH / Herbal Drug Companies

Looking for computational validation of your Ayurvedic, Unani, or Siddha formulations? We specialize in molecular docking and network pharmacology for traditional medicines. INR pricing available.

Email us directly →

Request Docking / Modeling Quote

Quote within 24 hours. NDA available upon request.

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