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Enterprise Pharma Services

Computational Biology. From Target to Trial.

Target identification, biomarker discovery, pharmacogenomics, large-cohort genomics, multi-omics integration, and regulatory bioinformatics — the intelligence layer pharma R&D teams need but can't scale in-house. PhD-led. NDA-first. India pricing.

Request Confidential Briefing → View Capabilities
$15K+
Starting Engagement
100K+
Samples Capacity
NDA
Before Data Exchange
50–60%
Below Western CRO
The Gap

Your CRO Runs the Trial.
Who Runs the Computational Biology?

Large CROs handle trial operations — randomization, site management, data collection, regulatory filing. But the computational biology that powers modern drug development sits in a different skill set entirely: genomic target validation, biomarker-driven patient stratification, pharmacogenomic dose optimization, multi-omics mechanism-of-action studies. Your internal comp bio team is overloaded. Your CRO doesn't offer it. That's the gap Genix fills.

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Before the Trial

Target identification from multi-omics. Biomarker panel design. Companion diagnostics gene selection. Patient stratification models. Computational validation before wet-lab investment.

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During the Trial

Pharmacogenomic response stratification. Genomic data from trial patients analysed in real-time. Responder vs non-responder molecular signatures. Dose-genotype correlation.

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After the Trial

Real-world evidence from genomic cohorts. Multi-omics outcome correlation. PRS validation in diverse populations. Regulatory bioinformatics documentation for submission packages.

6 Capabilities

Full-Stack Translational Bioinformatics

Each capability available standalone or as part of integrated multi-phase engagements. Every deliverable PhD-reviewed, NDA-protected, and regulatory-ready.

Pre-Clinical

Target Identification & Validation

$20K–$75K

Computationally identify and validate drug targets from multi-omics data before committing to wet-lab validation. Integrates GWAS hits, transcriptomic dysregulation, protein interactome networks, and druggability assessment to prioritize targets with the highest probability of clinical success.

Multi-omics target prioritization
GWAS signal integration (MAGMA, FUMA)
Transcriptomic dysregulation analysis
PPI network & hub gene identification
Druggability assessment (DGIdb, Open Targets)
Causal inference (Mendelian randomization)
Tissue expression profiling (GTEx)
Competitive landscape (target novelty report)
MAGMA Open Targets STRING Cytoscape MR-Base
4–8 weeks
Translational

Biomarker Discovery & Companion Diagnostics

$25K–$100K

Machine learning–driven biomarker discovery from genomic, transcriptomic, and proteomic data. Design companion diagnostic gene panels, build patient stratification models, and validate signatures across independent cohorts. Deliverables formatted for regulatory CDx submissions.

ML biomarker panel (XGBoost, RF, LASSO)
SHAP/LIME feature importance
Patient stratification model
CDx gene panel design
Cross-cohort validation
ROC/AUC performance metrics
Responder signature identification
Regulatory-formatted methodology report
scikit-learn XGBoost SHAP DESeq2 cBioPortal
6–12 weeks
Clinical Genomics

Pharmacogenomics (PGx) Analytics

$15K–$60K

Variant-drug interaction analysis, metaboliser phenotype prediction (CYP2D6, CYP2C19, CYP3A4, DPYD, UGT1A1, TPMT), and population-specific pharmacogenomics using South Asian allele frequencies from gnomAD SAS — a Genix differentiator for Indian-population clinical trials. Dose optimisation modelling and actionable PGx reporting.

Star allele calling (CYP2D6, CYP2C19, etc.)
Metaboliser phenotype assignment
Population-specific AF (gnomAD SAS)
PharmGKB / CPIC guideline mapping
Drug-gene interaction report
Dose adjustment recommendations
Cohort PGx landscape summary
Actionable clinical PGx report (per patient)
Stargazer PharmCAT PharmGKB CPIC gnomAD SAS
3–6 weeks
Population Scale

Large Cohort Genomic Analysis

$30K–$200K

Analyse 1,000 to 100,000+ samples — GWAS, PRS development and validation, rare variant burden testing, structural variant detection, and ancestry-adjusted analysis. Pipelines compatible with UK Biobank, All of Us, and GenomeIndia data formats. Cloud-native (AWS Batch / Nextflow) for unlimited horizontal scaling.

GWAS (PLINK2, REGENIE, SAIGE)
PRS development & validation
Rare variant burden tests (SKAT, SKAT-O)
Ancestry principal components + adjustment
Structural variant calling (Manta, DELLY)
Phasing & imputation (Eagle2, Minimac4)
Fine-mapping (SuSiE, FINEMAP)
Manhattan / QQ / locus zoom plots
PLINK2 REGENIE SAIGE PRSice-2 AWS Batch
4–12 weeks
Systems Biology

Multi-Omics Data Integration

$25K–$100K

Joint analysis of RNA-Seq + ATAC-Seq + proteomics + metabolomics for mechanism-of-action studies. Use MOFA+, DIABLO, weighted gene co-expression networks, and network-based integration to find convergent biology that single-omic analysis misses. Published in Nature-tier frameworks.

MOFA+ / DIABLO integration
WGCNA co-expression networks
Pathway-level convergence analysis
Cross-omic correlation matrices
Network-based drug repurposing
Latent factor identification
Integrative visualizations
MoA hypothesis report
MOFA+ mixOmics WGCNA NetworkX
6–12 weeks
Regulatory

Regulatory Bioinformatics Support

$15K–$50K

Documentation and validation support for NGS-based diagnostic submissions. Analytical validation reports (sensitivity, specificity, reproducibility, limit of detection), bioinformatics pipeline validation documentation, and methods sections for FDA 510(k)/PMA, CE-IVD, and CDSCO SaMD submissions.

Analytical validation report (SNV/InDel/CNV)
Sensitivity / specificity / PPV / NPV tables
Reproducibility & repeatability studies
Limit of detection analysis
Pipeline validation (GIAB concordance)
Bioinformatics methods for 510(k)/PMA
CDSCO SaMD documentation
Version-controlled audit trail
GIAB GA4GH FDA CDSCO
4–8 weeks
Engagement Models

Flexible Engagement Structures

Project-based, milestone-based, or annual retainer — structured to match how pharma procurement works.

Capability Starting At Typical Range Timeline Billing
Target Identification & Validation $20,000 $20K–$75K 4–8 weeks Milestone (40/30/30)
Biomarker Discovery & CDx Design $25,000 $25K–$100K 6–12 weeks Milestone (30/30/20/20)
Pharmacogenomics Analytics $15,000 $15K–$60K 3–6 weeks 50/50
Large Cohort Analysis (1K–100K samples) $30,000 $30K–$200K 4–12 weeks Milestone + cloud compute pass-through
Multi-Omics Integration $25,000 $25K–$100K 6–12 weeks Milestone (40/30/30)
Regulatory Bioinformatics $15,000 $15K–$50K 4–8 weeks 50/50
Annual Retainer (Pharma Enterprise) $8,000/mo $8K–$20K/mo 12-month term Monthly advance, Net-15

NDA-First Workflow

Mutual NDA executed before any data exchange, scoping discussion, or methodology sharing. Pre-signed NDA available — sent within 1 hour of request.

Cloud Compute Transparency

Large cohort projects include cloud compute as a pass-through cost (AWS at-cost + 15% management). No hidden markup. Compute estimated upfront and capped in the proposal.

vs Western CRO Pricing

50–60% below Fios Genomics, Rancho Biosciences, Eurofins equivalents. Same pipelines (GATK, REGENIE, MOFA+), same PhD quality, India cost structure.

Why Pharma R&D Teams Choose Genix

01

PhD Founder Leads Every Engagement

Not a project manager routing work to juniors. The PhD founder personally scopes, reviews, and signs off on every pharma deliverable. Your programme director talks to our PhD, not a sales rep.

02

South Asian Population Genomics Expertise

gnomAD SAS allele frequencies integrated into every analysis. Critical for Indian-population clinical trials, where Western reference panels miss population-specific variants. A genuine differentiator no Western CRO offers.

03

Full Stack — Pre-Clinical Through Regulatory

Target ID → docking → biomarkers → PGx → cohort analysis → regulatory documentation. One partner across the entire computational biology lifecycle. No multi-vendor coordination overhead.

04

Days, Not Quarters

Internal teams have 4–8 week queues. Western CROs take 2–4 weeks to onboard. Genix delivers first milestone in 1–2 weeks. Your programme timeline doesn't wait for vendor bureaucracy.

05

Enterprise-Grade Data Security

NDA before data exchange. SFTP with key-based auth. LUKS-encrypted storage. AWS ap-south-1 data residency. 90-day post-project deletion. SOC 2 Type 1 on roadmap. Your compounds and patient data are safe.

06

Platform Upgrade Path

Start with project-based services. Graduate to the Genix Bioinformatics SaaS Platform for self-serve analysis at scale ($18K–$300K/yr). Services → SaaS = one seamless partner, growing with your needs.

Engagement Models

Flexible Engagement Structures

Project-based, milestone-based, or annual retainer — structured to match how pharma procurement works.

Capability Starting At Typical Range Timeline Billing
Target Identification & Validation$20,000$20K–$75K4–8 weeksMilestone (40/30/30)
Biomarker Discovery & CDx Design$25,000$25K–$100K6–12 weeksMilestone (30/30/20/20)
Pharmacogenomics Analytics$15,000$15K–$60K3–6 weeks50/50
Large Cohort Analysis (1K–100K samples)$30,000$30K–$200K4–12 weeksMilestone + cloud compute pass-through
Multi-Omics Integration$25,000$25K–$100K6–12 weeksMilestone (40/30/30)
Regulatory Bioinformatics$15,000$15K–$50K4–8 weeks50/50
Annual Retainer (Pharma Enterprise)$8,000/mo$8K–$20K/mo12-month termMonthly advance, Net-15

NDA-First Workflow

Mutual NDA executed before any data exchange, scoping discussion, or methodology sharing. Pre-signed NDA available — sent within 1 hour of request.

Cloud Compute Transparency

Large cohort projects include cloud compute as a pass-through cost (AWS at-cost + 15% management). No hidden markup. Compute estimated upfront and capped in the proposal.

vs Western CRO Pricing

50–60% below Fios Genomics, Rancho Biosciences, Eurofins equivalents. Same pipelines (GATK, REGENIE, MOFA+), same PhD quality, India cost structure.

Why Pharma R&D Teams Choose Genix

01

PhD Founder Leads Every Engagement

Not a project manager routing work to juniors. The PhD founder personally scopes, reviews, and signs off on every pharma deliverable. Your programme director talks to our PhD, not a sales rep.

02

South Asian Population Genomics Expertise

gnomAD SAS allele frequencies integrated into every analysis. Critical for Indian-population clinical trials, where Western reference panels miss population-specific variants. A genuine differentiator no Western CRO offers.

03

Full Stack — Pre-Clinical Through Regulatory

Target ID → docking → biomarkers → PGx → cohort analysis → regulatory documentation. One partner across the entire computational biology lifecycle. No multi-vendor coordination overhead.

04

Days, Not Quarters

Internal teams have 4–8 week queues. Western CROs take 2–4 weeks to onboard. Genix delivers first milestone in 1–2 weeks. Your programme timeline doesn't wait for vendor bureaucracy.

05

Enterprise-Grade Data Security

NDA before data exchange. SFTP with key-based auth. LUKS-encrypted storage. AWS ap-south-1 data residency. 90-day post-project deletion. SOC 2 Type 1 on roadmap. Your compounds and patient data are safe.

06

Platform Upgrade Path

Start with project-based services. Graduate to the Genix Bioinformatics SaaS Platform for self-serve analysis at scale ($18K–$300K/yr). Services → SaaS = one seamless partner, growing with your needs.

Pharma Questions

Can you handle 50,000+ sample GWAS cohorts?

Yes. Our pipelines run on AWS Batch with auto-scaling — we horizontally scale to hundreds of parallel instances for large cohorts. We use REGENIE and SAIGE which are designed for biobank-scale data (100K+ samples). We've architected our Nextflow pipelines to handle UK Biobank and All of Us compatible formats. Cloud compute costs are estimated upfront and passed through at cost + 15% management fee — fully transparent.

What makes your PGx analysis different for Indian populations?

Most Western CROs use global or European allele frequencies for PGx analysis. This misses population-specific variants critical in South Asian populations — for example, CYP2C19*2 frequency is significantly higher in South Asians (~35%) vs Europeans (~25%), directly affecting clopidogrel metabolism. We integrate gnomAD South Asian (SAS) allele frequencies into every variant classification, combined with IndiGen/GenomeIndia reference data where available. For Indian-population clinical trials, this is not optional — it's essential for accurate metaboliser phenotype assignment.

Can your biomarker results be used in regulatory CDx submissions?

Our biomarker discovery outputs are designed to feed into CDx development workflows. We provide the computational discovery and cross-cohort validation — the gene panel design, performance metrics (sensitivity, specificity, AUC), and methodology documentation formatted for regulatory review. However, the clinical validation (prospective study, CLIA lab testing) is the client's or their CDx partner's responsibility. We can also provide regulatory bioinformatics documentation support for the analytical validation portion of FDA 510(k)/PMA submissions.

How do you handle IP and confidentiality for proprietary drug programmes?

Mutual NDA is executed before any data exchange — we have a pre-signed template ready to send within 1 hour. All data stored on LUKS-encrypted servers and AWS ap-south-1 (Mumbai region) with server-side encryption. Only assigned analysts access project data. All results, code, and deliverables transfer to the client as exclusive IP upon final payment. Data is deleted 90 days post-project (or on your schedule). We never publish, present, or reference client work without explicit written consent. We do not require authorship.

What if we need a quick pilot before a full engagement?

We recommend a paid pilot for first engagements — typically $5K–$10K for a focused analysis on a subset of your data (e.g., 10 samples, 1 target, 1 biomarker cohort). This lets both sides evaluate fit without a $50K+ commitment. Pilot scope, timeline, and deliverables are defined in a mini-proposal. If the pilot leads to a full engagement, we credit pilot costs against the full project fee.

Do you support multi-year pharma partnerships?

Yes — we offer Enterprise Retainer agreements ($8K–$20K/month, 12-month minimum) that embed Genix as a standing computational biology partner. Retainer clients get a dedicated analyst, priority queue, quarterly roadmap reviews, and 20–30% savings vs project pricing. For multi-programme pharma companies, we can structure MSAs covering multiple therapeutic areas with separate work orders per programme. This is how the relationship scales from $50K/year to $200K+/year.
Confidential Inquiry

Describe Your
Programme. We'll Design
the Computational Strategy.

NDA-first. Scoping call within 48 hours. Methodology note and proposal within 1 week. No obligation.

Email

pharma@genix.ai

Response Time

NDA within 1 hour. Scoping call within 48 hours.

Request Confidential Briefing

NDA available within 1 hour. Scoping call within 48 hours. No obligation.

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